To rotate the screen, please follow theinstructions for the Raspberry Pi.

After rotating the screen, you will need to recalibrate the touchscreen.

If using X11 (a.k.a. XWindows) you can add a transformation matrix instead of recalibrating the touchscreen.

# 90-degree clockwise rotation
xinput set-prop "Microchip Technology Inc. AR1100 HID-MOUSE" "Coordinate Transformation Matrix" 0 1 0 -1 0 1 0 0 1
 
# 90-degree counterclockwise rotation
xinput set-prop "Microchip Technology Inc. AR1100 HID-MOUSE" "Coordinate Transformation Matrix" 0 -1 1 1 0 0 0 0 1
 
# 180-degree rotation
xinput set-prop "Microchip Technology Inc. AR1100 HID-MOUSE" "Coordinate Transformation Matrix" -1 0 1 0 -1 1 0 0 1

To apply the setting each time the panel PC boots into X Windows, create a file in the /etc/X11/xorg.conf.d/ like /etc/X11/xorg.conf.d/01-touchscreen-rotation.conf with contents similar to the following:

Section "InputClass"
    Identifier "AR1100 Transformation Matrix"
    MatchProduct "Microchip Technology Inc. AR1100 HID-MOUSE"
    Option "TransformationMatrix" "-1 0 1 0 -1 1 0 0 1"
EndSection